PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00982.160
Common NameJCGZ_18924
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 253aa    MW: 28548.4 Da    PI: 8.0664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00982.160genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.8e-2194143356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+k+++ge
  Jcr4S00982.160  94 YRGIRRRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDEAAKRIRGE 143
                     9*******.**********72....35**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3193151IPR001471AP2/ERF domain
CDDcd000185.65E-3393149No hitNo description
SMARTSM003808.9E-3793156IPR001471AP2/ERF domain
PROSITE profilePS5103223.77593150IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2393151IPR016177DNA-binding domain
PfamPF008477.0E-1594143IPR001471AP2/ERF domain
PRINTSPR003671.7E-1194105IPR001471AP2/ERF domain
PRINTSPR003671.7E-11116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MCGGAIISDF VAVKRSRRLN AEDLWSELDT FSDFLGLDYP NNGNKEVLPS HFDLELPQKP  60
NQLNEVEKIT EKASHSQGDV KEGNKTKRTR KNIYRGIRRR PWGKWAAEIR DPHKGVRVWL  120
GTYNTAEEAA RAYDEAAKRI RGEKAKLNFG QSPPLAPALV PPYKKRCLIN PGMATASYQM  180
TAPPPEPYAS LGYQKEMASD YKLKEQISSL EMFLGLEPEE MAAQLSCEGF NSVDLWMLGD  240
LVSHHQNHGL LPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2094149359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2094149662ATERF1
3gcc_A2e-2094149662ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
186100KRTRKNIYRGIRRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0220020.0KF022002.1 Jatropha curcas APETALA2-ethylene-responsive element binding protein 1 (AP2-EREBP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295729.10.0ethylene-responsive transcription factor RAP2-3
TrEMBLA0A067K7Q30.0A0A067K7Q3_JATCU; Uncharacterized protein
STRINGPOPTR_0008s23260.11e-89(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.19e-48ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]